Showing posts with label fungal disease. Show all posts
Showing posts with label fungal disease. Show all posts

Sunday, 14 April 2019

Amphibian apocalypse is twice as bad as scientists thought - via Herp Digest



 More than 500 frog and salamander species are suffering from a deadly fungal disease. 

By Jason Bittel 3/28/19 Washington Post

There is a plague ripping through the amphibian species of the world. It’s caused by fungus that’s invisible to the naked eye and spreads easily by many means. It kills by disrupting the way these creatures breathe through their skin, essentially suffocating frogs and salamanders.

The disease is called chytridiomycosis, and according to a landmark study published Thursday in the journal Science, it’s even worse than we thought.

Scientists once estimated that about 200 species of frogs and salamanders have been harmed by the disease, but the study concludes that chytrid fungus has contributed to declines in at least 501 amphibian species. Ninety of the species are thought to have gone extinct because of it. Populations in tropical Australia, Central and South America seem to be hardest hit, though populations in Africa, Europe and North America are also affected. According to this accounting, the epidemic has caused the worst loss of biodiversity of any disease ever recorded.

“It’s a staggering thing to consider,” said Jonathan Kolby, one of the study’s authors and a herpetologist specializing in conservation and wildlife diseases at James Cook University in Australia. “We’ve never before had a single disease that had the power to make multiple species extinct, on multiple continents, all at the same time.”

Carly Muletz Wolz, a molecular pathogen scientist at the Smithsonian National Zoo’s Center for Conservation Genomics, said she was not surprised by the findings and that it was important to finally see the scale of the problem quantified.

“This is the newest, best estimate on where things stand,” said Muletz Wolz, who was not involved in the study. “And it’s probably even worse than this, because you only know what you know.”

The scope of the chytrid fungus’s onslaught on the amphibian world is unprecedented. West Nile virus, now a relatively well-known pathogen, affects just 23 bird species. The fungus laying waste to bat populations across North America, white nose syndrome, is attacking about a dozen species.

“You’ve got hundreds if not thousands of frog species that could go extinct, and they’re getting much less attention from a global health perspective,” said Kolby, who helped establish the Honduras Amphibian Rescue and Conservation Center

Scientists suspect the lineage of the chytrid fungus that has been ravaging frog populations became more virulent in the 1980s, after it hybridized with another lineage. As more people transport infected amphibians in the global pet trade, the more opportunity there is for the fungus to spread and further hybridize
“There’s nothing preventing hybridization from happening again, and if it happens again, who knows what that hybrid offspring will act like,” Kolby said. “We could have another global wave of disease, which could be similar, different or even worse than the one we’re facing now.”

In 2013, scientists discovered a species of chytrid that goes after salamanders, called Batrachochytrium salamandrivorans. Fortunately, this species has not yet made its way into the United States. In 2016, the U.S. Fish and Wildlife Service made it illegal to import 201 high-risk species of salamander as a safeguard against outbreaks.

There are no such restrictions in the frog trade.
Kolby said the United States and other countries need to enact stricter biosecurity measures for several reasons. It’s already been shown that frogs and toads can harbor the fungus that afflicts salamanders, so only banning certain salamander species may not be enough to protect native species.

In many ways, the United States already does a good job of preventing the spread of diseases that affect crops and livestock, Kolby said, thanks to agencies such as the Agriculture Department and the Centers for Disease Control and Prevention. Chytrid fungus may have slipped through the cracks, however, because it does not immediately affect humans.

“What concerns me is there’s going to be a next time. By not using this as a learning experience about what happens when we aren’t being careful, it almost undoubtedly ensures that the wildlife trade is moving other pathogens right now, be it for mammals, birds, fish. You name it,” he said.

It is unclear how a global amphibian decline will disrupt the various ecosystems they inhabit. Many species improve water quality by clearing waterways of vegetation when they are in the tadpole stage of development. Other frog species play a crucial role in keeping mosquito numbers in check by feasting on their larvae. And countless other species rely on frogs as a food source.

Even though the outlook is darker than it’s ever been, glimmers of hope exist. Kolby and his co-authors were able to find documented population trends for 292 frog species that have seen declines because of chytrid. Of those, 60 species have shown some evidence of recovery, possibly because they evolve to resist the fungus. The scientists note, however, that these recoveries are mostly of individual populations, rather than rebounds for the species at large.

“It at least gives us something to look at in terms of why some species are recovering and why others are not,” said Muletz Wolz.

Kolby said he can understand how the news fuels a sense of hopelessness.

“But I think that’s the worst thing that could come out of this,” he said. “I still look at this as just one huge opportunity to learn how to not let this happen again.”

Sunday, 19 August 2018

Snake fungal disease alters skin microbiome in eastern Massasaugas - via Herp Digest




August 14, 2018-Source: University of Illinois at Urbana-Champaign


In the first study of its kind, researchers characterized the skin microbiome of a population of free-ranging snakes to begin to understand how the animals' environmental microbial community may promote disease resistance as well as how it may be disrupted by infection.

The study, which was recently published in Scientific Reports, a Nature research journal, focused on eastern massasaugas in Illinois. This species of endangered rattlesnake is highly susceptible to the fungal pathogen Ophidiomyces ophiodiicola, which causes snake fungal disease (SFD). SFD results in disfiguring sores on snake skin, has a high mortality rate, and poses a significant threat to snake populations in North America and Europe. The mechanism by which the pathogen causes disease is unknown.

"Globally, fungal pathogens are increasingly associated with wildlife epidemics, such as white-nose syndrome in bats and chytridiomycosis in amphibians," said Dr. Matt Allender, a faculty member at the University of Illinois College of Veterinary Medicine and an affiliate of the Illinois Natural History Survey (INHS), part of the university's Prairie Research Institute. "Snake fungal disease has been identified in a number of snake species, but very little is known about contributing factors for infection."
Dr. Allender, who heads the Wildlife Epidemiology Laboratory, has been investigating SFD for more than 8 years. In 2014 he introduced a quantitative polymerase chain reaction (qPCR) test to quickly identify the fungus from a swabbed sample.

"In a 20-year collaborative study led by INHS researchers, we have been the primary investigator of numerous studies documenting disease trends in the eastern massasauga including overall health, but none of these health parameters seemed to explain the emergence of SFD. This study was undertaken in light of recent promising findings about the importance of environmental microbial communities in animal and human health.”

Based on their analysis of 144 skin swabs collected from 44 snakes in 2015 and 52 snakes in 2016, all near Carlyle Lake, Ill., researchers determined that infection with SFD altered the bacterial and fungal diversity of the snakes studied. On the infected snakes, Ophidiomyces was present even at locations on the snakes' bodies distant to the open sores, indicating that the skin's entire microbiome is altered by the infection.

No Ophidiomyces spores were detected on SFD-negative snakes, as would have been expected had those snakes' microbiome proven protective against the pathogen.

Findings related to the specific bacteria and fungi found in greater or lesser abundance depending on the disease status of the snake are detailed in the study.

The researchers believe their findings will have broad relevance to other snake species and habitats and will provide insight into mechanisms of pathogen emergence, fluctuations in wellness of individuals, and development of therapeutic interventions.

Story Source:
Materials provided by University of Illinois at Urbana-Champaign. Note: Content may be edited for style and length.

Journal Reference:
Matthew C. Allender, Sarah Baker, Megan Britton, Angela D. Kent. Snake fungal disease alters skin bacterial and fungal diversity in an endangered rattlesnake. Scientific Reports, 2018; 8 (1) DOI: 10.1038/s41598-018-30709-x



Sunday, 13 August 2017

Fungal disease poses real threat to W.Va. snake population – via Herp Digest



WV Dept. of Commerce
Juvenile eastern milk snake discovered with first case of Snake Fungal Disease in W.Va.

Metro News, by Chris Lawrence, 7/29/17

ROMNEY, W.Va. — An eastern milk snake in Kanawha County has become the second snake in West Virginia in the past 11 years to be confirmed with Snake Fungal disease. Division of Natural Resources officials worry the condition is spreading and poses a threat to snake populations.

WV Dept. of Commerce
Open wounds and crusty scabs on the skin are signs of snake fungal disease, although it’s easily confused with the normal shedding process.


“The clinical signs include crusty patches or scabs on the skin of the animal.  The snake acts very lethargic,” said Kevin Oxenrider who oversees reptiles and amphibians in West Virginia.

The discovery is the first contemporary case. Oxenrider and other researchers now can trace the disease all the way back to 2006 in West Virginia when a rattlesnake, captured as part of a study suddenly, and mysteriously died.   A clinical analysis of the snake at the time revealed no conclusions about its demise.  However, a second test on a biopsy from the same snake a decade later, armed with more knowledge, revealed it was in fact the state’s first case of snake fungal disease.

“We know it’s been present since 2006.  It went undetected from 2006 to 2016,” he explained. “Now we’ve had this animal recently turn up and test positive for the disease.”

The fungal infection appears to be prevalent throughout the northeastern United States.  Where it originated and what causes it remain unknown.  Studies on the condition are in the very early stages.

“It’s thought that it’s probably not native to North America, but it’s still very under studied,” Oxenrider explained. “It seems to be hardest on rattlesnakes in the northeast, but it can impact any species.  A large number of snakes throughout the northeast have been contracting the symptoms with open wounds, scabs, and impacts to their dermis layer of skin which is causing them to die.”

Although a lot of attitudes about snakes are very negative, Oxenrider notes it’s a serious problem and could threaten the balance of the Eco-system.

“The reason people need to care about this, although people dislike snakes, they do serve a very important purpose,” he explained. “Snakes consume a lot of invertebrates or bus. They consume birds and a lot of small mammals.  If we don’t have snakes you could have an over abundance of those species and that could be a problem.”

Snakes tend to cut down on numbers of mice, rats, chipmunks and other small rodents which are known to carry serious disease some of which can infect humans.

If you observe a snake which appears sick, Oxenrider hopes the public will be willing to leave it alone and take a picture to submit to the DNR so they can examine the evidence.

“A lot of times we’ve been getting people submitting pictures of snakes just shedding their skin.  That can be easily confused with the clinical signs of snake fungal disease,” said Oxenrider. “That’s why we’re asking people to not just go ahead and kill it thinking it had snake fungal disease.  It’s possible that it’s just shedding.”

You can contact your local DNR district office to inquire more or submit pictures of the stressed snakes.


Wednesday, 9 August 2017

Snake fungal disease confirmed in Europe for first time – via Herp Digest



Posted on July 18, 2017, Wildlife Society by Dan Kokilinsky

A team of researchers has documented the first detection of the fungus responsible for snake fungal disease in wild snakes in Europe. They wrote about their findings in a study published in June in Scientific Reports. The fungus they found is novel strain of Ophidiomyces ophiodiicola, based on genetic studies and culture characteristics, they reported, so there is no evidence that it has been introduced to Europe from North America, where snake fungal disease has decimated snake populations.

The discovery began with a female grass snake (Natrix natrix) with skin lesions that veterinarians from the Zoological Society of London examined in 2015. The team used a combination of molecular, microbiological and microscopic tests to detect Ophidiomyces ophiodiicola, the fungus that’s responsible for snake fungal disease. The disease is known to affect over 20 different species of wild snakes in the eastern and Midwestern parts of the United States and was first recognized in 2006.

“Because we were aware of the investigation and concerns about snake fungal disease in North America, it was on our radar as a condition to look for,” said Becki Lawson, a wildlife veterinarian at the Zoological Society of London and a coauthor of the study.

After initial discovery of the skin lesions in the grass snake, Lawson and her colleagues examined samples of wild snakes collected between 2010 and 2016 in Great Britain as well as the Czech Republic, where a single skin shed from a dice snake (Natrix tessellata) was identified as having evidence of sores consistent with the disease.

The team determined the disease was present in several samples of grass snakes studied in Great Britain as well as the single dice snake in the Czech Republic.

Lawson said she hopes to continue monitoring the disease to understand its significance to wild snake health and to determine whether it is impacting adversely at a population level leading to declines. Great Britain has just three native snake species and it remains unknown whether the adder (Vipera berus) and smooth snake (Coronella austriaca) are also susceptible to the condition.

Because the European fungus is genetically novel, Lawson said, the origin of the disease remains unclear and requires further investigation.
“Through an international team effort, we hope to learn about the origin and impact of snake fungal disease. We want to know whether or not there’s evidence of the fungus being introduced historically or if it’s a native,” Lawson said. Regardless of where the fungus originated, she said, environmental factors, such as climate, may affect the likelihood of the disease occurring.


Lawson said she recommends that biosecurity measures are adopted as a routine by owners of captive snakes, ecological consultants and herpetologists, to safeguard wild and captive snake health.

Saturday, 22 November 2014

Snake Fungal Disease Confirmed in 14 Species of Snakes - via Herp Digest


November 17, 2014, By John Virata
Snake Fungal Disease, first confirmed in a captive rat snake in 2006, has now been confirmed in 14 species of wild snakes across the Eastern and Midwest United States. The disease, thought to be caused by the fungus Ophidiomyces (formerly Chrysosporium) ophiodiicola, a fungus, but is not the definitive cause of SFD. The disease has been reported in snakes in Florida, Illinois, Massachusetts, Minnesota, New Jersey, New York, Ohio, South Carolina, Tennessee and Wisconsin.
Scientists are not sure how the snakes acquire the disease, but do know that it has devastating and usually fatal consequences for the snakes that catch it. The  United States Geological Survey National Wildlife Health Center has so far collected evidence of the fungus on several types of non-venomous and venomous snakes, including the northern water snake (Nerodia sipedon), eastern racer (Coluber constrictor), rat snake (Pantherophis obsoletus species complex), timber rattlesnake (Crotalus horridus), massasauga (Sistrurus catenatus), pygmy rattlesnake (Sistrurus miliarius), and milk snake (Lampropeltis triangulum).
 The disease is devastating to the snakes because it attacks the mouth and face area of the snakes, which prevents them from eating and drinking water. Its symptoms include scabs and crusty scales. According to researchers the outermost layer of the skin separates from the underlying skin and the eyes become cloudy even though the snake is not in shed. The face of the snake also becomes swollen. Some species don’t show any outward signs of the fungus, but when they are necropsied, the fungus is found in the lungs. 

Tuesday, 8 October 2013

Wentwood Forest: Larch disease felling in ancient woodland

The felling of diseased trees across an area the size of around 300 football pitches is taking place at Wales' largest ancient woodland.

Larch trees at Wentwood Forest, near Newport, have become infected with the fungal disease Phytophthora ramorum.

The infection can kill trees and has spread across the UK after being found in south west England four years ago.

The Woodland Trust, which owns most of the forest, said the felling of the trees was essential.

"This is the most serious and devastating action we've had to take on our estate," said the trust's head of woodland management, Andrew Sharkey.

"It again highlights both the need to tackle tree disease and the importance of restoring as much of our damaged ancient woodland to make it more resilient in decades to come."

Felling the infected conifers across an area of 200 hectares (500 acres) will leave the Woodland Trust with a £35,000 bill for replanting in the forest.

It also hits restoration work that has been taking place since the trust bought 352 hectares (869 acres) of Wentwood in 2006.

Saturday, 29 June 2013

Snake Fungal Disease: The White-Nose Syndrome for Reptiles? - via Herp Digest

By Matt Miller, Senior Science Writer, Cool Green Science, Blog for Nature Conservancy- 6/11/13-While studying timber rattlesnake movement patterns and habitat use in Vermont, researchers made a surprising discovery: snakes covered in lesions, particularly around their faces.

Called snake fungal disease, it’s a disease showing up with increasing frequency in snakes around the eastern and midwestern United States. Conservationists fear it could pose a similar threat to snakes as white-nose syndrome in bats.

That’s a scary comparison: white-nose syndrome was first documented in 2007 in New York and has since spread widely, killing millions of bats as far west as Oklahoma. It has recently been raging through caves in the Smoky Mountains and has been verified in Kentucky’s Mammoth Cave National Park. So far, despite many efforts at controlling the spread, the disease rages on. Could snakes face a similar menace?

Timber rattlesnakes don’t move as widely as bats, but they do share some habits. They too hibernate underground in communal dens—often with other snake species. During hibernation, immune systems are suppressed. This combination can create a fertile ground for fungal disease growth and spread.

“There has been a lot of money spent on white-nose syndrome, and a lot of educational outreach, but so far they’ve been unable to stop the spread in bats,” says Emily Boedecker, acting state director for The Nature Conservancy in Vermont. “Snakes are even less appreciated by the public than bats. An emerging disease is a significant concern.”

The research partnership between the Vermont Department of Fish and Wildlife, the Orianne Society and The Nature Conservancy captured snakes to monitor their movements through radio telemetry. But they also weighed and measured snakes, and assessed their health. That’s when researchers found snake fungal disease. It has never been documented in Vermont before, but now it was turning up on numerous snakes.

Snake fungal disease has been documented sporadically in the past, but it began showing up with increasing frequency beginning in 2006. While it has been known to cause mortality, the effects on snake populations is yet unknown – in large part due to the secretive nature of snakes.

“We have more questions than answers,” says Dr. Chris Jenkins, executive director of the Orianne Society. “We don’t know if it’s a big deal yet, but we need to look into it closely.”

Jenkins notes that the disease does not appear to be spreading like white-nose syndrome; it is appearing in different parts of the country at the same time. It’s possible that snake fungal disease is not new but is only now being recognized. “Maybe we just weren’t looking for it,” he says.

When they emerge from hibernation, timber rattlesnakes bask in the sun, which appears to help control the lesions.

Another possibility is that the disease has always been present, but now has been exacerbated by a change in environmental conditions, including climate change.

In Vermont, researchers found that the timber rattlesnake population had relatively low genetic diversity, not surprising given its isolation. “Low genetic diversity and a fungal disease is a combination I find very disconcerting,” says Doug Blodgett, a wildlife biologist for the Vermont Department of Fish and Wildlife.

The problem with wildlife diseases – indeed, any threats to wildlife – is that they are not considered serious threats until it’s too late. It is difficult to predict what will be a minor issue and what will devastate millions of animals – as has turned out to be the case with white-nose syndrome, and fungal diseases impacting amphibians.

While snake fungal disease was not a focus of the Vermont research, it may be one of the most important findings. Hopefully this time conservationists can gather necessary information and develop strategies to stop the disease before it devastates snake populations.

“We know so little about this disease, but now we know it’s here and we can start addressing the issue,” says Blodgett. “We know we can’t ignore it. The past should teach us that.”



http://blog.nature.org/science/2013/06/11/snake-fungal-disease-the-white-nose-syndrome-for-reptiles/ you can find a photo of milk snake captured in New York shows signs of fungal and bacterial infections. Photo: D.E. Green, USGS National Wildlife Health Center

Friday, 24 February 2012

Loneliest frog in the world is the last of his kind (Rabbs' fringe-limbed tree frog) (via Herp Digest)

Atlabbta, GA, 2/18/11 by Paul Cockerton 

There were believed to be just two Rabbs' fringe-limbed tree frogs left on Earth after a fungus killed off their species in the wild

A Rabbs' fringe-limbed tree frog is the loneliest little amphibian in the world after the only other one of his kind croaked it.

There were believed to be just two left on Earth after a fungus killed off their species in the wild.
But zoo officials in Atlanta in the US said it had to put down one frog due to ill health.

That leaves just one remaining example of the species, living in the botanical garden in Atlanta.

Amphibian populations are declining around the world and some of the last survivors of Central America's once rich diversity of frogs now exist only in captivity.

The species was identified by Zoo Atlanta's herpetology curator Joseph Mendelson during a 2005 trip to Panama.

He hopes that they can preserve genetic material from the deceased frog to help to study the species.
He said: "Had the frog passed away overnight when no staff members were present, we would have lost any opportunity to preserve precious genetic material.

"To lose that chance would have made this extinction an even greater tragedy in terms of conservation, education and biology."

The Rabbs' fringe-limbed tree frog has not been observed in the wild since 2007 and is believed to be extinct.

Zoo Atlanta is a leader in the effort to combat the crisis of global amphibian decline.

Sunday, 19 February 2012

New fungal disease discovered in threatened juniper

Plantlife is extremely concerned as a serious fungal infection is found in juniper in County Durham.

February 14 2012
Phytopthera austrocedrus, recently confirmed in Britain, is a fungus infection that is usually fatal to infected trees. It has been confirmed on common juniper in northern England as well as on Lawson’s cypress and Nootka cypress in Scotland.
Plantlife welcomes the news that Natural England, the Forestry Commission and FERA are working together with the landowners to contain and minimise the damage to this nationally important population.
County Durham has already suffered a 43% loss in juniper in the period 1987-1999 and it is vital that all is done to curtail the spread of the disease. We hope that this will include warning signs to the public so that they can take action to avoid spreading the disease to other populations of this threatened species.
Plantlife has revised biosecurity advice to field staff, volunteers and contractors in line with this development and would encourage other land management organisations to do the same.
In Scotland, the UK’s stronghold for juniper, Plantlife Flora Guardians act as an early warning system at key juniper sites, using a tested methodology, suitable for volunteers, to assess juniper population health. In addition, Plantlife runs management and restoration projects throughout Britain, with the aim of restoring populations to full reproductive capacity.
“While Phytopthera species are a part of wild ecosystems, the potential impact on key plant species and habitats in wild is of great concern" says Plantlife Scotland Conservation Manager Deborah Long.
"Just as we would like to see effective action in place to prevent the spread ofPhytopthera ramorum into wild blaeberry in Scotland, we would also like to see effective, preventative action in place to prevent the spread of into other juniper populations across the UK. We fully support the action taken at Teesdale to limit spread to other sites and would ask visitors to follow all on site advice as well as sign up in Scotland as a Flora Guardian to help us monitor the health of juniper populations across Scotland.”

Tuesday, 27 September 2011

Frog killer immune genes revealed

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