Monday 30 September 2019

University of Alberta undergrad uses micro-CT to address the mystery of snake evolution – via Herp Digest

by Nicholas Villeneuve, The Gateway, University of Alberta’s Student Journalism Society, 8/21/19

Utilizing micro-CT scanning technology, an undergraduate student at the University of Alberta has published a research study that could help find the evolutionary link between snakes and reptiles.

This August, undergraduate student Catie Strong and graduate student Tiago Simões, supervised by Michael Caldwell and Michael Doschak, published a research study on the developmental biology of Plains garter snakes in order to retrace their evolutionary processes and relationships.

 This makes them the first team to ever utilize micro-CT technology to image any snake or reptile skulls at various stages of their development. 

Strong, lead author of the study and third-year paleontology student at the time of publishing, said this research was inspired by the absence of scientific knowledge on the relationship between snakes and reptiles.

“We’re still not really sure what group of lizards snakes really evolved from and how snakes fit into the larger lizard-snake evolutionary tree,” Strong said.

The group chose to study Plains garter snakes because their common and ordinary nature makes them ideal candidates for further in-depth study and analysis.

“Because they are so common, it’s really easy to overlook them and that there’s not anything important that they can tell us,” Strong explained. “Part of that decision was trying to give [garter snakes] the attention that they haven’t really been given previously by other researchers.” 

The study employed micro-CT scanning technology in mapping out garter snake skulls. It functions similarly to a hospital CT scan, using X-rays to create 2D images or virtual “slices” of the subject, except with much more detail on a finer scale. The slices are then compiled together to create a 3D model that can be easily manipulated and studied.

With this technology, Strong and her fellow researchers were able to accurately identify and analyze microscopic structures within garter snake skulls at various stages of their development, and gain insight into their evolutionary path.

“We looked at the braincase (the upper-back part of the skull) in some aspects and how that develops,” Strong said. “We also looked at feeding mechanisms, like how the jaws and related parts of the skull develop, and we looked at some of the unique developmental pathways that we found present in the garter snake.”

Strong said she’s “really proud” and “grateful” for her research work on the study while being an undergraduate student and transitioning towards graduate school.  

“It’s pretty rare for an undergrad to have this really hands-on experience and to get a publication out of it is amazing for me on a personal level.”
How red-eared invaders are hurting California’s native turtles

In the summer of 2011, visitors to the University of California, Davis, Arboretum may have witnessed an unusual site: small teams of students wielding large nets, leaping into the arboretum’s waterway to snag basking turtles.

The students weren’t in search of new pets — quite the opposite, in fact. The teams were part of a massive project to remove hundreds of invasive red-eared slider turtles from the arboretum in an effort to observe how California’s native western pond turtles fair in the absence of competitors.

Red-eared sliders are the most commonly traded pet turtles in the world, but are often released into the wild by disgruntled owners when they get too big to handle. Thanks to illegal dumping, the sliders, which are native to the Central United States and Northeastern Mexico, can now be found all over the world. Their new stomping grounds include California, where they vie for food and sunny basking sites with western pond turtles, whose populations are in rapid decline due to agriculture and urbanization.

The results of the removal study, published recently in the journal PeerJ, showed that western pond turtles get a lot fatter and healthier without competition from their invasive brethren — and the remaining sliders likely fair better, too. The study is the first to quantify competition between these two species in the wild.

“I think, finally, we have some good evidence in the United States that it’s time to critically think about not having pet slider turtles, and likely other aquatic turtles, and mitigating this pet trade because it’s not great for the pets, and it’s not great for these wild species either,” said Max Lambert, a postdoctoral researcher at the University of California, Berkeley, and lead author of the study.

It’s not hard to see why red-eared sliders are the most popular pet turtle in the United States: As hatchlings, sliders are small, friendly and sport striking red stripes on either side of their heads.

But give it a few years, and the once-cute reptiles grow snappy, smelly and can expand to the size of a dinner plate.

“They are so cheap, they are in every single pet store, and they seem like a great pet until they get to be a few years old, and then they get big, mean, smelly and are a pain to take care of,” Lambert said. “So, people just take them to a nearby pond and let them go.”

As an undergraduate studying ecology and conservation at UC Davis, Lambert was curious to know what effect these invasive turtles might be having on western pond turtles, which are currently listed as vulnerable on IUCN’s Red List of Threatened Species. While experiments in laboratory settings have hinted that sliders will compete for food with pond turtles, he couldn’t find any data looking at how the two species interact in the wild.

Lambert and five other UC Davis undergraduates teamed up with their faculty adviser, H. Bradley Shaffer, who is a professor of ecology and evolutionary biology at UCLA, and Gregory Pauly, curator of herpetology at the Natural History Museum of Los Angeles County and senior author of the study, to design the removal experiment.

With the help of volunteers and other UC Davis undergraduates, including Jennifer McKenzie and Robyn Screen, who are co-first authors of the recent publication, the team used turtle traps, nets and, when necessary, their own hands, to remove and euthanize 177 red-eared sliders living in the UC Davis Arboretum waterway during the summer of 2011. Lambert estimates they caught about 90 percent of the total red-eared slider population in the arboretum.

They also tracked the weight of the western pond turtles and observed the turtles’ basking habits. Time spent basking in the sun is critical for cold-blooded turtles; they need the heat to power digestion and their immune systems, Lambert said.

The researchers found that, in the year after the slider removal, the pond turtles gained an average of about 40 grams, representing about 5 to 10% of their body weight — quite a lot for a turtle. This weight gain is especially important for female turtles, whose egg clutch size is related to their overall size, Pauly said.

“If these females are much healthier and much more likely to have larger clutch sizes, that increases the likelihood that we are then going to get more juvenile turtles cruising around these urban waterways,” said Pauly, who was a postdoctoral researcher studying reptile and amphibian conservation at UC Davis at the start of the experiment.
While the slider removal didn’t have much of an impact on the western pond turtles’ basking behavior, the researchers did find that the remaining sliders spread out to a few select basking sites, indicating that they were actually crowding each other out before the removal.

“The reality is, in many of these urban ponds, there are so many red-eared sliders that there are high levels of competition amongst those sliders for basking sites and also probably for food,” Pauly said. “It’s not just that red-eared sliders are having negative impacts on the western pond turtles, but the red-eared sliders are themselves facing this huge series of challenges.”

As a postdoctoral researcher at UC Berkeley, Lambert says he has plans to study western pond turtles and red-eared sliders in the Bay Area. He is initiating partnerships with the East Bay Regional Park District to first observe western pond turtles in ponds and lakes in the system, and then conduct another intensive removal of red-eared sliders in and around places like Jewel Lake.

“What we found with our slider removal at Davis was that it was just so human-intensive and would cost any agency a ton of money to do what we did at that scale,” Lambert said. “And so, while it seems that slider removal has an effect, the question is, ‘How much of an effect is it having, relative to western pond turtles living in an urban place, where they get run over by cars, eaten by raccoons and coyotes and dogs and sometimes taken home as pets by people not realizing the negative impacts they are having?’ We’re hoping to parse out a bit better the degree to which sliders are having an impact relative to every other challenge we throw at these turtles.”

Co-authors of the paper include Jennifer M. McKenzie of the University of Kentucky, Robyn M. Screen of the University of Hawaii at Manoa, Adam G. Clause of the Natural History Museum of Los Angeles County, Benjamin B. Johnson of Cornell University and Genevieve G. Mount of Louisiana State University.

This work was supported by National Science Foundation DEB grants (1257648 & 1457832), the Natural History Museum of Los Angeles County and the Northern California Herpetological Society.

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